Vučićević, Jelica

Link to this page

Authority KeyName Variants
c701e84e-4f76-4f4f-8b07-e7dfe8adec13
  • Vučićević, Jelica (2)
Projects

Author's Bibliography

Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors

Đikić, Teodora; Vučićević, Jelica; Laurila, Jonne; Radi, Marco; Veljković, Nevena; Xhaard, Henri

(Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia, 2021)

TY  - CONF
AU  - Đikić, Teodora
AU  - Vučićević, Jelica
AU  - Laurila, Jonne
AU  - Radi, Marco
AU  - Veljković, Nevena
AU  - Xhaard, Henri
PY  - 2021
UR  - https://farfar.pharmacy.bg.ac.rs/handle/123456789/4863
AB  - Centrally acting hypotensive imidazoline derivatives are agonists of α2-adrenoceptors and non-adrenergic
I1-imidazoline receptors. Based on the finding that a central antihypertensive agent with high affinity for
I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been
suggested that imidazoline receptors agonists might have a therapeutic potential in cancer therapy. Never-
theless, rilmenidine itself does not represent a suitable candidate because of possible side effect caused by
activation of α 2 -adrenergic receptors. In our previous work, several novel rilmenidine-derived compounds
with anticancer potential and without an agonistic activity on α 2
-adrenoceptor were identified. Taking into
consideration that human α2
-adrenergic receptors belong to the rhodopsin-like class A of G protein-coupled
receptors (GPCRs), the biggest group of drug targets, that share structure similarity, it is reasonable to assume
that these ligands might have the affinity on some other receptors from the same class.
To investigate potential additional targets for novel imidazoline I1 agonists a reverse docking protocol on
107 GPCRs, using 63 imidazoline ligands and their 670 decoys was prepared. Unlike typical molecular dock-
ing protocol, where series of small molecules are docked in one macromolecular target, in case of reverse
docking a small-molecule is docked in the set of potential target proteins. Due to the availability of crystal
structures all of the included GPCRs, were in inactive state, and therefore suitable for identification of the
receptors antagonized by imidazoline ligands. Based on ROC curves and Enrichment Factors, 20 potential
off-target GPCRs were selected. To better assess the affinity of imidazoline derivatives for chosen receptors,
an additional docking study was performed, and docking scores of imidazolines were compared with docking
scores of known antagonists. Finally, to verify in silico results, three ligands with high scores and tree ligands
with low scores were tested for antagonistic activity on α2
-adrenergic receptors.
The protocol described here could be applied on all the small molecules, for the detection of potential inter-
actions with GPCRs of class A, in the early stage of drug design process. Additionally, this protocol is easily
expandable, by adding novel receptors/subfamily of receptors as soon as the crystal structures and/or 3D
models become available.
PB  - Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia
C3  - Biologia Serbica
T1  - Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors
VL  - 43
IS  - 1, Special Edition
SP  - 88
EP  - 88
UR  - https://hdl.handle.net/21.15107/rcub_farfar_4863
ER  - 
@conference{
author = "Đikić, Teodora and Vučićević, Jelica and Laurila, Jonne and Radi, Marco and Veljković, Nevena and Xhaard, Henri",
year = "2021",
abstract = "Centrally acting hypotensive imidazoline derivatives are agonists of α2-adrenoceptors and non-adrenergic
I1-imidazoline receptors. Based on the finding that a central antihypertensive agent with high affinity for
I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been
suggested that imidazoline receptors agonists might have a therapeutic potential in cancer therapy. Never-
theless, rilmenidine itself does not represent a suitable candidate because of possible side effect caused by
activation of α 2 -adrenergic receptors. In our previous work, several novel rilmenidine-derived compounds
with anticancer potential and without an agonistic activity on α 2
-adrenoceptor were identified. Taking into
consideration that human α2
-adrenergic receptors belong to the rhodopsin-like class A of G protein-coupled
receptors (GPCRs), the biggest group of drug targets, that share structure similarity, it is reasonable to assume
that these ligands might have the affinity on some other receptors from the same class.
To investigate potential additional targets for novel imidazoline I1 agonists a reverse docking protocol on
107 GPCRs, using 63 imidazoline ligands and their 670 decoys was prepared. Unlike typical molecular dock-
ing protocol, where series of small molecules are docked in one macromolecular target, in case of reverse
docking a small-molecule is docked in the set of potential target proteins. Due to the availability of crystal
structures all of the included GPCRs, were in inactive state, and therefore suitable for identification of the
receptors antagonized by imidazoline ligands. Based on ROC curves and Enrichment Factors, 20 potential
off-target GPCRs were selected. To better assess the affinity of imidazoline derivatives for chosen receptors,
an additional docking study was performed, and docking scores of imidazolines were compared with docking
scores of known antagonists. Finally, to verify in silico results, three ligands with high scores and tree ligands
with low scores were tested for antagonistic activity on α2
-adrenergic receptors.
The protocol described here could be applied on all the small molecules, for the detection of potential inter-
actions with GPCRs of class A, in the early stage of drug design process. Additionally, this protocol is easily
expandable, by adding novel receptors/subfamily of receptors as soon as the crystal structures and/or 3D
models become available.",
publisher = "Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia",
journal = "Biologia Serbica",
title = "Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors",
volume = "43",
number = "1, Special Edition",
pages = "88-88",
url = "https://hdl.handle.net/21.15107/rcub_farfar_4863"
}
Đikić, T., Vučićević, J., Laurila, J., Radi, M., Veljković, N.,& Xhaard, H.. (2021). Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors. in Biologia Serbica
Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia., 43(1, Special Edition), 88-88.
https://hdl.handle.net/21.15107/rcub_farfar_4863
Đikić T, Vučićević J, Laurila J, Radi M, Veljković N, Xhaard H. Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors. in Biologia Serbica. 2021;43(1, Special Edition):88-88.
https://hdl.handle.net/21.15107/rcub_farfar_4863 .
Đikić, Teodora, Vučićević, Jelica, Laurila, Jonne, Radi, Marco, Veljković, Nevena, Xhaard, Henri, "Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors" in Biologia Serbica, 43, no. 1, Special Edition (2021):88-88,
https://hdl.handle.net/21.15107/rcub_farfar_4863 .

Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora

Vučićević, Jelica; Popović, Marija; Nikolić, Katarina; Filipić, Slavica; Gagić, Žarko; Agbaba, Danica

(Univerzitet Crne Gore Farmaceutski fakultet, 2015)

TY  - CONF
AU  - Vučićević, Jelica
AU  - Popović, Marija
AU  - Nikolić, Katarina
AU  - Filipić, Slavica
AU  - Gagić, Žarko
AU  - Agbaba, Danica
PY  - 2015
UR  - https://farfar.pharmacy.bg.ac.rs/handle/123456789/5029
AB  - Ligandi imidazolinskih receptora predstavljaju brojnu familiju biološki aktivnih jedinjenja koja
imaju široku terapijsku primenu. Ovi ligandi mogu delovati na tri tipa imidazolinskih receptora (I1-
IR, I2-IR and I3-IR) I na alfa2-adreno receptore. Imidazolinski receptori suodgovorni za različite
biološke aktivnosti imidazolina. Stoga neki IRs ligandi su danas značajni za ispitivanje kao
novi centralno delujući antihipertenzivi i potencijalni kandidati za lečenje različitih neuroloških
oboljenja. Cilj ovog rada je bio da se proceni permeabilnost ovih liganada kroz Krvno-Moždanu
Barijeru (KMB).
Test permeabilnosti na veštačkim paralelnim membranama (eng. Parallel Artificial Membrane
Permeability Assay, PAMPA), bioparticiona micelarna hromatografija (eng. Biopartitioning
Micellar Chromatography, BMC) i reverzno-fazna tečna hromatografija pod visokim pritiskom
(eng. Reversed-Phase High-Performance Liquid Chromatography, RP-HPLC) su in vitro tehnike
korišćenje za predviđnje permeabilnosti kroz KMB imidazolinsih liganada. Vrednosti dobijene
korišćenjem PAMPA i BMC su ispitivane metodologijom kvantitativnog odnosa struktura i
osobina jedinjenja (eng. Quantitative Structure-Property Relationship, QSPR).
Retencioni faktori dobijeni korišćenjem BMC I RP-HPLC su korelisani sa koeficijentima
permeabilnosti dobijeni korišćenjem PAMPA. Pored toga, PLS (eng. Partial Least Square), MLR
(eng. Multiple Linear Regression) i ANN (eng. Artificial Neural Networks) modeli su razvijeni
korišćenjem retencionih podataka iz BMC sistema/efektivnih permeabilnosti iz PAMPA I
molekulskih parametara izračunatih za optimizovane strukture. Dominantni molekulski/katjonski
oblici jedinjenja na pH=7.4 su dobijeni korišćenjem MarvinSketch. Geometrijska optimizacija
liganada je izvršena korišćenjem Chem3DBio Ultra. Molekulski deskriptori za optimizovana
jedinjenja su izračunati korišćenjem Chem3DBio Ultra, Dragon and ADMET predictor programa.
U ovoj QSPR studiji retencioni faktori/efektivne permeabilnosti jedinjenja su korišćene kao
zavisne, dok izračunati deskriptori su korišćeni kao nezavisne varijable. SIMCA je korišćena za
PLS analizu dok je postupno MLR i ANN modeliranje izvršeno korišćenjem STASTICA Neural
Networks programa. Prognostički potencijal formiranih QSPR modela je potvrđen ukrštenom i
eksternom validacijom.
Formirani QSPR modeli mogu biti korišćeni kao brzi skrining metod za procenu krvno-moždane
permeabilnosti novih liganada imidazolinskih receptora, koji predstavljaju potencijalne kandidate
u lečenju hipertenizije i neuroloških oboljenja.
AB  - Imidazoline receptor ligands are a numerous family of biologically active compounds with many
therapeutic applications. Those ligands can act at the three types of imidazoline receptors (I1-IR, I2-
IR and I3-IR) and alpha2-adrenoceptors. Imidazoline receptors (IRs) are responsible for the versatile
biological activities of imidazolines. Therefore some IRs ligands are examined as novel centrally 192
acting antihypertensives and drug candidates for treatment of various neurological diseases. The
aim of this work was to evaluate Blood-Brain Barrier (BBB) permeability of these ligand. ParallelArtificial Membrane Permeability Assay (PAMPA) Biopartitioning Micellar Chromatography (BMC) and Reversed-Phase High-Performance Liquid Chromatography (RP HPLC) are in vitro
techniques used for predicting BBB penetration of imidazoline ligands. The values obtained using
PAMPA and BMC were studied by the Quantitative Structure-Property Relationship (QSPR)
methodology.
5HWHQLRQ IDFWRUV REWDLQHG XVLQJ %0& DQG 53 +3/& ZHUH FRUUHODWHG ZLWK SHUPHDELOLW\ FRHI¿FLHQWV 
obtained using PAMPA. Further, Partial Least Square (PLS), Multiple Linear Regression (MLR)
DQG  $UWL¿FLDO  1HXUDO  1HWZRUNV  $11   PRGHOV  ZHUH  GHYHORSHG  XVLQJ    UHWHQWLRQ  GDWD  IURP  %0& 
system/effective permeabilities from PAMPA and molecular parameters calculated for the optimized
FRPSRXQGV  7KH GRPLQDQW PROHFXOHV FDWLRQ VSHFLHV RI FRPSRXQGV DW S+     KDYH EHHQ REWDLQHG 
using the MarvinSketch. Chem3DBio Ultra program was applied for geometry optimization. The
molecular descriptors were calculated for the optimized compounds using ChemBio3D Ultra, Dragon
and ADMET predictor software. Retention factors/effective permeabilities of compounds were used
as dependant variable, while calculated molecular parametres were used as independent variables
in the QSPR study. SIMCA was used for PLS analysis, while the stepwise MLR and ANN modeling
were performed using STASTICA Neural Networks. Predictive potential of the formed models was
FRQ¿UPHG E\ /HDYH 2QH 2XW &URVV  DQG H[WHUQDO YDOLGDWLRQ 
Formed QSPR models can be used as a fast screening method for assessment of brain penetration
of novel imidazoline receptor ligands, as promissing drug candidates for treatment of hypertension
or neurological diseases.
PB  - Univerzitet Crne Gore Farmaceutski fakultet
PB  - Farmaceutska komora Crne Gore
C3  - II Congress of pharmacists of Montenegro with the international participation, 28-31.may 2015. Budva, Montenegro, Abstract book
T1  - Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora
T1  - Application of different in vitro techniques for predicting blood brain barrier penetration imidazoline receptor ligands
SP  - 190
EP  - 192
UR  - https://hdl.handle.net/21.15107/rcub_farfar_5029
ER  - 
@conference{
author = "Vučićević, Jelica and Popović, Marija and Nikolić, Katarina and Filipić, Slavica and Gagić, Žarko and Agbaba, Danica",
year = "2015",
abstract = "Ligandi imidazolinskih receptora predstavljaju brojnu familiju biološki aktivnih jedinjenja koja
imaju široku terapijsku primenu. Ovi ligandi mogu delovati na tri tipa imidazolinskih receptora (I1-
IR, I2-IR and I3-IR) I na alfa2-adreno receptore. Imidazolinski receptori suodgovorni za različite
biološke aktivnosti imidazolina. Stoga neki IRs ligandi su danas značajni za ispitivanje kao
novi centralno delujući antihipertenzivi i potencijalni kandidati za lečenje različitih neuroloških
oboljenja. Cilj ovog rada je bio da se proceni permeabilnost ovih liganada kroz Krvno-Moždanu
Barijeru (KMB).
Test permeabilnosti na veštačkim paralelnim membranama (eng. Parallel Artificial Membrane
Permeability Assay, PAMPA), bioparticiona micelarna hromatografija (eng. Biopartitioning
Micellar Chromatography, BMC) i reverzno-fazna tečna hromatografija pod visokim pritiskom
(eng. Reversed-Phase High-Performance Liquid Chromatography, RP-HPLC) su in vitro tehnike
korišćenje za predviđnje permeabilnosti kroz KMB imidazolinsih liganada. Vrednosti dobijene
korišćenjem PAMPA i BMC su ispitivane metodologijom kvantitativnog odnosa struktura i
osobina jedinjenja (eng. Quantitative Structure-Property Relationship, QSPR).
Retencioni faktori dobijeni korišćenjem BMC I RP-HPLC su korelisani sa koeficijentima
permeabilnosti dobijeni korišćenjem PAMPA. Pored toga, PLS (eng. Partial Least Square), MLR
(eng. Multiple Linear Regression) i ANN (eng. Artificial Neural Networks) modeli su razvijeni
korišćenjem retencionih podataka iz BMC sistema/efektivnih permeabilnosti iz PAMPA I
molekulskih parametara izračunatih za optimizovane strukture. Dominantni molekulski/katjonski
oblici jedinjenja na pH=7.4 su dobijeni korišćenjem MarvinSketch. Geometrijska optimizacija
liganada je izvršena korišćenjem Chem3DBio Ultra. Molekulski deskriptori za optimizovana
jedinjenja su izračunati korišćenjem Chem3DBio Ultra, Dragon and ADMET predictor programa.
U ovoj QSPR studiji retencioni faktori/efektivne permeabilnosti jedinjenja su korišćene kao
zavisne, dok izračunati deskriptori su korišćeni kao nezavisne varijable. SIMCA je korišćena za
PLS analizu dok je postupno MLR i ANN modeliranje izvršeno korišćenjem STASTICA Neural
Networks programa. Prognostički potencijal formiranih QSPR modela je potvrđen ukrštenom i
eksternom validacijom.
Formirani QSPR modeli mogu biti korišćeni kao brzi skrining metod za procenu krvno-moždane
permeabilnosti novih liganada imidazolinskih receptora, koji predstavljaju potencijalne kandidate
u lečenju hipertenizije i neuroloških oboljenja., Imidazoline receptor ligands are a numerous family of biologically active compounds with many
therapeutic applications. Those ligands can act at the three types of imidazoline receptors (I1-IR, I2-
IR and I3-IR) and alpha2-adrenoceptors. Imidazoline receptors (IRs) are responsible for the versatile
biological activities of imidazolines. Therefore some IRs ligands are examined as novel centrally 192
acting antihypertensives and drug candidates for treatment of various neurological diseases. The
aim of this work was to evaluate Blood-Brain Barrier (BBB) permeability of these ligand. ParallelArtificial Membrane Permeability Assay (PAMPA) Biopartitioning Micellar Chromatography (BMC) and Reversed-Phase High-Performance Liquid Chromatography (RP HPLC) are in vitro
techniques used for predicting BBB penetration of imidazoline ligands. The values obtained using
PAMPA and BMC were studied by the Quantitative Structure-Property Relationship (QSPR)
methodology.
5HWHQLRQ IDFWRUV REWDLQHG XVLQJ %0& DQG 53 +3/& ZHUH FRUUHODWHG ZLWK SHUPHDELOLW\ FRHI¿FLHQWV 
obtained using PAMPA. Further, Partial Least Square (PLS), Multiple Linear Regression (MLR)
DQG  $UWL¿FLDO  1HXUDO  1HWZRUNV  $11   PRGHOV  ZHUH  GHYHORSHG  XVLQJ    UHWHQWLRQ  GDWD  IURP  %0& 
system/effective permeabilities from PAMPA and molecular parameters calculated for the optimized
FRPSRXQGV  7KH GRPLQDQW PROHFXOHV FDWLRQ VSHFLHV RI FRPSRXQGV DW S+     KDYH EHHQ REWDLQHG 
using the MarvinSketch. Chem3DBio Ultra program was applied for geometry optimization. The
molecular descriptors were calculated for the optimized compounds using ChemBio3D Ultra, Dragon
and ADMET predictor software. Retention factors/effective permeabilities of compounds were used
as dependant variable, while calculated molecular parametres were used as independent variables
in the QSPR study. SIMCA was used for PLS analysis, while the stepwise MLR and ANN modeling
were performed using STASTICA Neural Networks. Predictive potential of the formed models was
FRQ¿UPHG E\ /HDYH 2QH 2XW &URVV  DQG H[WHUQDO YDOLGDWLRQ 
Formed QSPR models can be used as a fast screening method for assessment of brain penetration
of novel imidazoline receptor ligands, as promissing drug candidates for treatment of hypertension
or neurological diseases.",
publisher = "Univerzitet Crne Gore Farmaceutski fakultet, Farmaceutska komora Crne Gore",
journal = "II Congress of pharmacists of Montenegro with the international participation, 28-31.may 2015. Budva, Montenegro, Abstract book",
title = "Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora, Application of different in vitro techniques for predicting blood brain barrier penetration imidazoline receptor ligands",
pages = "190-192",
url = "https://hdl.handle.net/21.15107/rcub_farfar_5029"
}
Vučićević, J., Popović, M., Nikolić, K., Filipić, S., Gagić, Ž.,& Agbaba, D.. (2015). Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora. in II Congress of pharmacists of Montenegro with the international participation, 28-31.may 2015. Budva, Montenegro, Abstract book
Univerzitet Crne Gore Farmaceutski fakultet., 190-192.
https://hdl.handle.net/21.15107/rcub_farfar_5029
Vučićević J, Popović M, Nikolić K, Filipić S, Gagić Ž, Agbaba D. Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora. in II Congress of pharmacists of Montenegro with the international participation, 28-31.may 2015. Budva, Montenegro, Abstract book. 2015;:190-192.
https://hdl.handle.net/21.15107/rcub_farfar_5029 .
Vučićević, Jelica, Popović, Marija, Nikolić, Katarina, Filipić, Slavica, Gagić, Žarko, Agbaba, Danica, "Primena različitih in vitro tehnika za predviđanje permeabilnosti kroz krvno-moždanu barijeru liganada imidazolinskih receptora" in II Congress of pharmacists of Montenegro with the international participation, 28-31.may 2015. Budva, Montenegro, Abstract book (2015):190-192,
https://hdl.handle.net/21.15107/rcub_farfar_5029 .