Radi, Marco

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orcid::0000-0002-0874-6697
  • Radi, Marco (3)
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Author's Bibliography

Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors

Đikić, Teodora; Vučićević, Jelica; Laurila, Jonne; Radi, Marco; Veljković, Nevena; Xhaard, Henri

(Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia, 2021)

TY  - CONF
AU  - Đikić, Teodora
AU  - Vučićević, Jelica
AU  - Laurila, Jonne
AU  - Radi, Marco
AU  - Veljković, Nevena
AU  - Xhaard, Henri
PY  - 2021
UR  - https://farfar.pharmacy.bg.ac.rs/handle/123456789/4863
AB  - Centrally acting hypotensive imidazoline derivatives are agonists of α2-adrenoceptors and non-adrenergic
I1-imidazoline receptors. Based on the finding that a central antihypertensive agent with high affinity for
I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been
suggested that imidazoline receptors agonists might have a therapeutic potential in cancer therapy. Never-
theless, rilmenidine itself does not represent a suitable candidate because of possible side effect caused by
activation of α 2 -adrenergic receptors. In our previous work, several novel rilmenidine-derived compounds
with anticancer potential and without an agonistic activity on α 2
-adrenoceptor were identified. Taking into
consideration that human α2
-adrenergic receptors belong to the rhodopsin-like class A of G protein-coupled
receptors (GPCRs), the biggest group of drug targets, that share structure similarity, it is reasonable to assume
that these ligands might have the affinity on some other receptors from the same class.
To investigate potential additional targets for novel imidazoline I1 agonists a reverse docking protocol on
107 GPCRs, using 63 imidazoline ligands and their 670 decoys was prepared. Unlike typical molecular dock-
ing protocol, where series of small molecules are docked in one macromolecular target, in case of reverse
docking a small-molecule is docked in the set of potential target proteins. Due to the availability of crystal
structures all of the included GPCRs, were in inactive state, and therefore suitable for identification of the
receptors antagonized by imidazoline ligands. Based on ROC curves and Enrichment Factors, 20 potential
off-target GPCRs were selected. To better assess the affinity of imidazoline derivatives for chosen receptors,
an additional docking study was performed, and docking scores of imidazolines were compared with docking
scores of known antagonists. Finally, to verify in silico results, three ligands with high scores and tree ligands
with low scores were tested for antagonistic activity on α2
-adrenergic receptors.
The protocol described here could be applied on all the small molecules, for the detection of potential inter-
actions with GPCRs of class A, in the early stage of drug design process. Additionally, this protocol is easily
expandable, by adding novel receptors/subfamily of receptors as soon as the crystal structures and/or 3D
models become available.
PB  - Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia
C3  - Biologia Serbica
T1  - Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors
VL  - 43
IS  - 1, Special Edition
SP  - 88
EP  - 88
UR  - https://hdl.handle.net/21.15107/rcub_farfar_4863
ER  - 
@conference{
author = "Đikić, Teodora and Vučićević, Jelica and Laurila, Jonne and Radi, Marco and Veljković, Nevena and Xhaard, Henri",
year = "2021",
abstract = "Centrally acting hypotensive imidazoline derivatives are agonists of α2-adrenoceptors and non-adrenergic
I1-imidazoline receptors. Based on the finding that a central antihypertensive agent with high affinity for
I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been
suggested that imidazoline receptors agonists might have a therapeutic potential in cancer therapy. Never-
theless, rilmenidine itself does not represent a suitable candidate because of possible side effect caused by
activation of α 2 -adrenergic receptors. In our previous work, several novel rilmenidine-derived compounds
with anticancer potential and without an agonistic activity on α 2
-adrenoceptor were identified. Taking into
consideration that human α2
-adrenergic receptors belong to the rhodopsin-like class A of G protein-coupled
receptors (GPCRs), the biggest group of drug targets, that share structure similarity, it is reasonable to assume
that these ligands might have the affinity on some other receptors from the same class.
To investigate potential additional targets for novel imidazoline I1 agonists a reverse docking protocol on
107 GPCRs, using 63 imidazoline ligands and their 670 decoys was prepared. Unlike typical molecular dock-
ing protocol, where series of small molecules are docked in one macromolecular target, in case of reverse
docking a small-molecule is docked in the set of potential target proteins. Due to the availability of crystal
structures all of the included GPCRs, were in inactive state, and therefore suitable for identification of the
receptors antagonized by imidazoline ligands. Based on ROC curves and Enrichment Factors, 20 potential
off-target GPCRs were selected. To better assess the affinity of imidazoline derivatives for chosen receptors,
an additional docking study was performed, and docking scores of imidazolines were compared with docking
scores of known antagonists. Finally, to verify in silico results, three ligands with high scores and tree ligands
with low scores were tested for antagonistic activity on α2
-adrenergic receptors.
The protocol described here could be applied on all the small molecules, for the detection of potential inter-
actions with GPCRs of class A, in the early stage of drug design process. Additionally, this protocol is easily
expandable, by adding novel receptors/subfamily of receptors as soon as the crystal structures and/or 3D
models become available.",
publisher = "Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia",
journal = "Biologia Serbica",
title = "Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors",
volume = "43",
number = "1, Special Edition",
pages = "88-88",
url = "https://hdl.handle.net/21.15107/rcub_farfar_4863"
}
Đikić, T., Vučićević, J., Laurila, J., Radi, M., Veljković, N.,& Xhaard, H.. (2021). Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors. in Biologia Serbica
Department of Biology and Ecology Faculty of Sciences University of Novi Sad, Serbia., 43(1, Special Edition), 88-88.
https://hdl.handle.net/21.15107/rcub_farfar_4863
Đikić T, Vučićević J, Laurila J, Radi M, Veljković N, Xhaard H. Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors. in Biologia Serbica. 2021;43(1, Special Edition):88-88.
https://hdl.handle.net/21.15107/rcub_farfar_4863 .
Đikić, Teodora, Vučićević, Jelica, Laurila, Jonne, Radi, Marco, Veljković, Nevena, Xhaard, Henri, "Imidazolines: In silico off-target fishing in the class A of G protein-coupled receptors" in Biologia Serbica, 43, no. 1, Special Edition (2021):88-88,
https://hdl.handle.net/21.15107/rcub_farfar_4863 .

Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field

Đikić, Teodora; Vučićević, Jelica; Laurila, Jonne; Radi, Marco; Veljković, Nevena; Xhaard, Henri; Nikolić, Katarina

(Wiley-VCH Verlag, 2020)

TY  - JOUR
AU  - Đikić, Teodora
AU  - Vučićević, Jelica
AU  - Laurila, Jonne
AU  - Radi, Marco
AU  - Veljković, Nevena
AU  - Xhaard, Henri
AU  - Nikolić, Katarina
PY  - 2020
UR  - https://farfar.pharmacy.bg.ac.rs/handle/123456789/3639
AB  - Based on the finding that a central antihypertensive agent with high affinity for I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been suggested that imidazoline receptors agonists might have a therapeutic potential in the cancer therapy. Nevertheless, potential rilmenidine side effects caused by activation of α-adrenoceptors, or other associated receptors and enzymes, might hinder its therapeutic benefits. Considering that human α-adrenoceptors belong to the rhodopsin-like class A of G-protein-coupled receptors (GPCRs) it is reasonable to assume that imidazolines might have the affinity for other receptors from the same class. Therefore, to investigate possible off-target effects of imidazoline ligands we have prepared a reverse docking protocol on class A GPCRs, using imidazoline ligands and their decoys. To verify our in silico results, three ligands with high scores and three ligands with low scores were tested for antagonistic activity on α2- adrenoceptors.
PB  - Wiley-VCH Verlag
T2  - Molecular Informatics
T1  - Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field
VL  - 39
IS  - 7
DO  - 10.1002/minf.201900165
ER  - 
@article{
author = "Đikić, Teodora and Vučićević, Jelica and Laurila, Jonne and Radi, Marco and Veljković, Nevena and Xhaard, Henri and Nikolić, Katarina",
year = "2020",
abstract = "Based on the finding that a central antihypertensive agent with high affinity for I1-type imidazoline receptors – rilmenidine, shows cytotoxic effects on cultured cancer cell lines, it has been suggested that imidazoline receptors agonists might have a therapeutic potential in the cancer therapy. Nevertheless, potential rilmenidine side effects caused by activation of α-adrenoceptors, or other associated receptors and enzymes, might hinder its therapeutic benefits. Considering that human α-adrenoceptors belong to the rhodopsin-like class A of G-protein-coupled receptors (GPCRs) it is reasonable to assume that imidazolines might have the affinity for other receptors from the same class. Therefore, to investigate possible off-target effects of imidazoline ligands we have prepared a reverse docking protocol on class A GPCRs, using imidazoline ligands and their decoys. To verify our in silico results, three ligands with high scores and three ligands with low scores were tested for antagonistic activity on α2- adrenoceptors.",
publisher = "Wiley-VCH Verlag",
journal = "Molecular Informatics",
title = "Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field",
volume = "39",
number = "7",
doi = "10.1002/minf.201900165"
}
Đikić, T., Vučićević, J., Laurila, J., Radi, M., Veljković, N., Xhaard, H.,& Nikolić, K.. (2020). Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field. in Molecular Informatics
Wiley-VCH Verlag., 39(7).
https://doi.org/10.1002/minf.201900165
Đikić T, Vučićević J, Laurila J, Radi M, Veljković N, Xhaard H, Nikolić K. Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field. in Molecular Informatics. 2020;39(7).
doi:10.1002/minf.201900165 .
Đikić, Teodora, Vučićević, Jelica, Laurila, Jonne, Radi, Marco, Veljković, Nevena, Xhaard, Henri, Nikolić, Katarina, "Deciphering Imidazoline Off-targets by Fishing in the Class A of GPCR field" in Molecular Informatics, 39, no. 7 (2020),
https://doi.org/10.1002/minf.201900165 . .
1
1
1

A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin

Vučićević, Jelica; Srdić-Rajić, Tatjana; Pieroni, Marco; Laurila, Jonne M. M.; Perović, Vladimir; Tassini, Sabrina; Azzali, Elisa; Costantino, Gabriele; Glisić, Sanja; Agbaba, Danica; Scheinin, Mika; Nikolić, Katarina; Radi, Marco; Veljković, Nevena

(Pergamon-Elsevier Science Ltd, Oxford, 2016)

TY  - JOUR
AU  - Vučićević, Jelica
AU  - Srdić-Rajić, Tatjana
AU  - Pieroni, Marco
AU  - Laurila, Jonne M. M.
AU  - Perović, Vladimir
AU  - Tassini, Sabrina
AU  - Azzali, Elisa
AU  - Costantino, Gabriele
AU  - Glisić, Sanja
AU  - Agbaba, Danica
AU  - Scheinin, Mika
AU  - Nikolić, Katarina
AU  - Radi, Marco
AU  - Veljković, Nevena
PY  - 2016
UR  - https://farfar.pharmacy.bg.ac.rs/handle/123456789/2526
AB  - The clonidine-like central antihypertensive agent rilmenidine, which has high affinity for I-1-type imidazoline receptors (I-1-IR) was recently found to have cytotoxic effects on cultured cancer cell lines. However, due to its pharmacological effects resulting also from alpha(2)-adrenoceptor activation, rilmenidine cannot be considered a suitable anticancer drug candidate. Here, we report the identification of novel rilmenidine- derived compounds with anticancer potential and devoid of alpha(2)-adrenoceptor effects by means of ligand-and structure-based drug design approaches. Starting from a large virtual library, eleven compounds were selected, synthesized and submitted to biological evaluation. The most active compound 5 exhibited a cytotoxic profile similar to that of rilmenidine, but without appreciable affinity to alpha(2)-adrenoceptors. In addition, compound 5 significantly enhanced the apoptotic response to doxorubicin, and may thus represent an important tool for the development of better adjuvant chemotherapeutic strategies for doxorubicin-insensitive cancers.
PB  - Pergamon-Elsevier Science Ltd, Oxford
T2  - Bioorganic & Medicinal Chemistry
T1  - A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin
VL  - 24
IS  - 14
SP  - 3174
EP  - 3183
DO  - 10.1016/j.bmc.2016.05.043
ER  - 
@article{
author = "Vučićević, Jelica and Srdić-Rajić, Tatjana and Pieroni, Marco and Laurila, Jonne M. M. and Perović, Vladimir and Tassini, Sabrina and Azzali, Elisa and Costantino, Gabriele and Glisić, Sanja and Agbaba, Danica and Scheinin, Mika and Nikolić, Katarina and Radi, Marco and Veljković, Nevena",
year = "2016",
abstract = "The clonidine-like central antihypertensive agent rilmenidine, which has high affinity for I-1-type imidazoline receptors (I-1-IR) was recently found to have cytotoxic effects on cultured cancer cell lines. However, due to its pharmacological effects resulting also from alpha(2)-adrenoceptor activation, rilmenidine cannot be considered a suitable anticancer drug candidate. Here, we report the identification of novel rilmenidine- derived compounds with anticancer potential and devoid of alpha(2)-adrenoceptor effects by means of ligand-and structure-based drug design approaches. Starting from a large virtual library, eleven compounds were selected, synthesized and submitted to biological evaluation. The most active compound 5 exhibited a cytotoxic profile similar to that of rilmenidine, but without appreciable affinity to alpha(2)-adrenoceptors. In addition, compound 5 significantly enhanced the apoptotic response to doxorubicin, and may thus represent an important tool for the development of better adjuvant chemotherapeutic strategies for doxorubicin-insensitive cancers.",
publisher = "Pergamon-Elsevier Science Ltd, Oxford",
journal = "Bioorganic & Medicinal Chemistry",
title = "A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin",
volume = "24",
number = "14",
pages = "3174-3183",
doi = "10.1016/j.bmc.2016.05.043"
}
Vučićević, J., Srdić-Rajić, T., Pieroni, M., Laurila, J. M. M., Perović, V., Tassini, S., Azzali, E., Costantino, G., Glisić, S., Agbaba, D., Scheinin, M., Nikolić, K., Radi, M.,& Veljković, N.. (2016). A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin. in Bioorganic & Medicinal Chemistry
Pergamon-Elsevier Science Ltd, Oxford., 24(14), 3174-3183.
https://doi.org/10.1016/j.bmc.2016.05.043
Vučićević J, Srdić-Rajić T, Pieroni M, Laurila JMM, Perović V, Tassini S, Azzali E, Costantino G, Glisić S, Agbaba D, Scheinin M, Nikolić K, Radi M, Veljković N. A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin. in Bioorganic & Medicinal Chemistry. 2016;24(14):3174-3183.
doi:10.1016/j.bmc.2016.05.043 .
Vučićević, Jelica, Srdić-Rajić, Tatjana, Pieroni, Marco, Laurila, Jonne M. M., Perović, Vladimir, Tassini, Sabrina, Azzali, Elisa, Costantino, Gabriele, Glisić, Sanja, Agbaba, Danica, Scheinin, Mika, Nikolić, Katarina, Radi, Marco, Veljković, Nevena, "A combined ligand- and structure-based approach for the identification of rilmenidine-derived compounds which synergize the antitumor effects of doxorubicin" in Bioorganic & Medicinal Chemistry, 24, no. 14 (2016):3174-3183,
https://doi.org/10.1016/j.bmc.2016.05.043 . .
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